YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HVCN1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRYLKHFTA VGDNKSAVPT WHEEDTSHHV TTLHDAPDGL EVSTGQHLGQ LSFRDSLRKL  60
   61 YSTERFQIVV VCLVVLDAIF VLCELLIDLS IIEADHHRIA PQVFHYLSLA LLTFFMVELA 120
  121 GKIFAYRLEF LHHKFEVFDG IVVVVSFILD IIYISKEDAF DAMGLLILLR LWRVARIING 180
  181 ILVSVQNRAN HRVEKLKEIN ESLVHQVNEL KEQNTKMDQE NVRLRALLKD HSIDF

Type	Start	End	Confidence
Cytoplasmic	1	65	0.98
Transmembrane Helix	66	87	0.91
Non-Cytoplasmic	88	102	0.82
Transmembrane Helix	103	126	0.88
Cytoplasmic	127	134	0.91
Transmembrane Helix	135	154	0.78
Non-Cytoplasmic	155	161	0.68
Transmembrane Helix	162	183	0.51
Cytoplasmic	184	235	0.80