YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZNT5_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.72
Transmembrane Helix	25	43	0.67
Non-Cytoplasmic	44	52	0.79
Transmembrane Helix	53	73	0.93
Cytoplasmic	74	90	0.92
Transmembrane Helix	91	112	0.90
Non-Cytoplasmic	113	118	0.74
Transmembrane Helix	119	140	0.81
Cytoplasmic	141	147	0.72
Transmembrane Helix	148	164	0.91
Non-Cytoplasmic	165	195	0.79
Transmembrane Helix	196	216	0.85
Cytoplasmic	217	232	0.90
Transmembrane Helix	233	254	0.91
Non-Cytoplasmic	255	264	0.79
Transmembrane Helix	265	284	0.95
Cytoplasmic	285	296	0.89
Transmembrane Helix	297	318	0.89
Non-Cytoplasmic	319	337	0.90
Transmembrane Helix	338	358	0.93
Cytoplasmic	359	414	0.97
Transmembrane Helix	415	435	0.94
Non-Cytoplasmic	436	445	0.82
Transmembrane Helix	446	465	0.94
Cytoplasmic	466	481	0.79
Transmembrane Helix	482	501	0.92
Non-Cytoplasmic	502	517	0.86
Transmembrane Helix	518	539	0.90
Cytoplasmic	540	600	0.98
Transmembrane Helix	601	623	0.92
Non-Cytoplasmic	624	628	0.85
Transmembrane Helix	629	651	0.90
Cytoplasmic	652	775	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEKYSSNVI SSGKLGRVEA PNARLTRYIV LLYFTKMLKA FGIFESYDIL KVVHIVQFLF  60
   61 ILKMGCAVIL VFFQKPFSSG KMIPKRQWIK ILKHAVISCI ISLLGFFGLT LCGPLRSLLL 120
  121 FEHSDLVVIS LLSVLFTSSG GGPSKTRGAA FFIIAVICLL LFDNDDLMAK MAEHPEGHHD 180
  181 SALTHALYTG IAFLGVADHK GGVVLLVLAL CLKVAFNTAS RKLSVEIGGA KRLYALSNLV 240
  241 SAVVLLPWVI VLSATTESKV ESWSGLIFPF AMIIFSVMIL DFYVESICMA KLETSRCARY 300
  301 GAIFLFLNGL LLANFWTHPL TGQIRAISTT GQQSSTEHVL SGGVLVSACF FIMADSILSA 360
  361 PSSKGQKGTL VGYSPEGTPL YNFMGDALQH TSQSLPRFIK DSLKQILEEY DSRQIFYFLC 420
  421 LNLAFTFVEL FYGVWTNSLG LISDGFHMLF DCSALVLGLF AALMTRWKAT RIYSYGYGRV 480
  481 EILSGFINGL FLMVIAFFVF VESVTRLVDP PNINTDMLTP VSVGGLIVNL VGICAFSHAH 540
  541 SHGASKGSCS GHDHGHSHHG HGHSSMEHSH GGHGHSHGGH GHSHGHGHSH SSGGMNANMR 600
  601 GVFLHVLADT LGSVGVIIST ILIRQFGWLI ADPICSLFIS TLIFLSVIPL LKDACEVLLL 660
  661 RMPPQHEKEL NFALEKIQKI EGVLSYRDPH FWRHSASVIA GTIHLQLMSD VVEQRVIQQV 720
  721 SAVLKDAGVN NLTIQLEKEA YFQHMSGLSS GFHEVLTMTQ QMESMKYYKD GTCIM