YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DHSDA_DANRE
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLIRLSSV WQRGMRPVLL CHTQLSRGSA CPRIGDVDYT EPAGRIHTAS SSTGISASQH  60
   61 WTGERVMTLV LLGMAPAAYL CPGPVVDYSI AAALTMHGHW GIGQVLTDYV HGEVKIKLAK 120
  121 VGIFLLSTAT FFGLCYFNYN DVGLCKAVVM LWQK

Type	Start	End	Confidence
Cytoplasmic	1	65	0.82
Transmembrane Helix	66	91	0.61
Non-Cytoplasmic	92	117	0.62
Transmembrane Helix	118	140	0.70
Cytoplasmic	141	154	0.48