YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RT15_DANRE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLKSVFRST VLGLRTWSVF SVARQSKTTL PAFSQAQCSS YTNWTFSRHF KGDETLLNQP  60
   61 VRQYARPSRK KQEFPSQLED LKTSMLKHEY ASVPLAQSVD DVVKKLLTLE FANHSEKLRL 120
  121 KEEQLIAKVQ RDENDRSSTE VKVAILTARI RNFQEHLHKH PKDKANKRWM LMTIDKRKKL 180
  181 LKFLRRTRYD SFEKVCKELG ITYTFPPEYY RRVTRRWLAK KAFCNKVFKE VQRLKAAERE 240
  241 KQKAEEAERK KSSSSTNPQE TAA

Type	Start	End	Confidence
Signal Peptide	1	21	0.66
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	263	0.99