YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RFNG_DANRE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLSHVASNK TCFLLSLAFC ALLVLLIPSL QPPQRQADLP QPRPHAKPAK HPLKNSLYRP  60
   61 NEDTRGGGFT QTPPPDNLEK MDDLNSHYRD FLDLRDIFIA VKTTRKYHKS RLQLLSQTWV 120
  121 SRAKEQTFIF TDGEDKELRL KAGLNIINTN CSAAHTRQAL CCKMSVEYDK FIESQKKWFC 180
  181 HVDDDNYVIL PSLLELLSSY SHTQDVYLGR PSLDHPIEAA ERVKSDGSVS VKFWFATGGA 240
  241 GFCISRGLAL KMSPWASLGN FITTAEKIRL PDDCTIGYII EALLEVPLTH TGLFHSHLEN 300
  301 LQRLPAENIL RQVTLSYGGF ENRRNVVSVG GAFSLAEDPT RFKTVHCKLY PDTEWCPRKT 360
  361 RH

Type	Start	End	Confidence
Signal Peptide	1	37	0.99
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	362	0.97