YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125852895, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLVSCVGF LLLFVWLSPS QALYFHIGET EKKCFIEEIP DETMVIGRYR TQLWDKQAGS  60
   61 FLPSTPGLGM HVEIKDPETK VILSRQYGSD GRFTFTSHTP GEHQICLHSN STKMALFAGG 120
  121 KLRVHLDIQV GEHTNNYPEI AAKDKLTELQ LRVRQLLDQV EQIQKEQNYQ RYREERFRMT 180
  181 SESTNQRVLW WSIAQTVILI ITGIWQMKHL KSFFEAKKLV

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	187	0.99
Transmembrane Helix	188	207	0.87
Cytoplasmic	208	220	0.86