YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50539794, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCCDQRCAL ITGAVLGALI ALLGGILIPV GDMIIKNTVH KETVLENGTL AFDTWTSVDI  60
   61 AMYRQFWIFN VENPDKVLSE GSKPVLVQKG PYTYRVRYIP KTNITFNDNN TVSFVLPAGA 120
  121 TFEPSMSVGS EEDVFTSLNL AVAGVYRLIG PKLADWLIRS SGSSLFQNRT VKELLWGYKD 180
  181 PMLNSLVGAF YPYNGTVDGP YTVFTGKDDI NKVAIIERWQ GETSVNYWND SYCDKINGSD 240
  241 GSSFHPFLDK KEPLYFFSPD ICRSISAEYE ATVNLKGIDV YRYLLPVDAL ASPVSNPDNM 300
  301 CYCTDHEITR NCTLAGLLDI TSCKGTPVFI SLPHFLYASI ELQQGVVGMN PNLDEHSIFL 360
  361 DVEPITGFTL RFSKRLQVNM MYGPSDDIAL LNKIKEHTII PILWLNETAV LDDETAKMFK 420
  421 NELISRMDML EGLQIGLLVT GSAIFLGCMI GLIVVCSKPS KTNLS

Type	Start	End	Confidence
Cytoplasmic	1	7	0.72
Transmembrane Helix	8	30	0.72
Non-Cytoplasmic	31	434	0.90
Transmembrane Helix	435	456	0.94
Cytoplasmic	457	465	0.83