YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125817614, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVGKMKFTF QKRVKLAQGL WMLSWLATVG GAITFTLGCF LKTELRRRGE VMDNTDIHCV  60
   61 PNTLMIVGLA SMGGNYFASR ICQDALDAGR FPRWKTYMKP FFGCSIFFTT LMLISIILSY 120
  121 IMKGSLETSL KIGLKNGIRF YKDTDIPGRC FQKQTIDRLQ MEFHCCGNTD YRDWFEVQWI 180
  181 SNRYLDFSSK EVKDRIRSNV DGRYLVDGVP FSCCNPSSPR PCIQYKITND SAHYNYEHET 240
  241 EELNLFIHGC REALVNYFMG LMNTIGAVVL SVFLIQCSVL SSVRLLQTSM EAVAGQENVE 300
  301 IDTEGYLLEK ALKETIMEYV DPVMKLLLLN QVGSSEDKAE AGAATS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.59
Transmembrane Helix	21	41	0.94
Non-Cytoplasmic	42	57	0.61
Transmembrane Helix	58	79	0.73
Cytoplasmic	80	99	0.53
Transmembrane Helix	100	122	0.92
Non-Cytoplasmic	123	346	0.55