YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7212788, gi\|4...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALENILLHL NSKVWTDAGT ILLLFILFLL VSVKLRNRNK PTKTFLLGPT PLPFIGNVFN  60
   61 LDTSQPHICL TKMSDHYGNI FSLRLGSLNT VVVNTYSMVK KVLNDQGNSF MYRPSNDITE 120
  121 RILSKCQGLT FNNGYSWKQH RRFTLSTLKF FGVGKRSLEF IIMEEYKFLH QSILDTNGLP 180
  181 FNPHYIINNG VSNIICSMVF GRRFEYTDQR FLNMLSLISK ALKLQTSVFI QLYAAFPRLM 240
  241 DLLPGPHKEL FSCFHQVRAF IKEEVDKHRA DWDPSSPRDF IDCYLTEIEK MKDDLEAGFH 300
  301 DEGLQYAVLD LFVAGTETTS TTLLWAFVYM MKYQKSKKVQ AEIDKVVGRY RRPSMDDRPC 360
  361 MPYTDAVIHE IQRMGNVVPL SVPRMTNEDT LLEGLFHSLR VLQIIPNLTS VLFDQTKWKT 420
  421 QHSFDPQNFL NAQGKLKSLK LLSPFSLGKR SCPGESLARM ELFLFFTSFL QSFSLSAPDE 480
  481 TQTSLDFKCG MTLSPKPFKI CFTPR

Type	Start	End	Confidence
Cytoplasmic	1	13	0.38
Transmembrane Helix	14	35	0.78
Non-Cytoplasmic	36	505	0.72