YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPSG3_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTEGNNFY IPMSNRTGLV RSPYEYPQYY LAEPWQFKLL AVYMFFLMCF GFPINGLTLV  60
   61 VTAQHKKLRQ PLNFILVNLA VAGTIMVCFG FTVTFYTAIN GYFVLGPTGC AIEGFMATLG 120
  121 GQISLWSLVV LAIERYIVVC KPMGSFKFSS NHAFAGIGFT WIMALSCAAP PLVGWSRYIP 180
  181 EGMQCSCGPD YYTLNPDYNN ESYVLYMFCC HFIFPVTTIF FTYGRLVCTV KAAAAQQQES 240
  241 ESTQKAEREV TRMVILMVLG FLVAWTPYAS VAAWIFFNRG AAFSAQFMAV PAFFSKSSSI 300
  301 FNPIIYVLLN KQFRNCMLTT LFCGKNPLGD DESSTVSTSK TEVSSVSPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.98
Transmembrane Helix	39	62	0.90
Cytoplasmic	63	73	0.89
Transmembrane Helix	74	96	0.93
Non-Cytoplasmic	97	113	0.77
Transmembrane Helix	114	133	0.87
Cytoplasmic	134	151	0.79
Transmembrane Helix	152	173	0.92
Non-Cytoplasmic	174	202	0.96
Transmembrane Helix	203	224	0.91
Cytoplasmic	225	253	0.89
Transmembrane Helix	254	276	0.90
Non-Cytoplasmic	277	286	0.77
Transmembrane Helix	287	309	0.78
Cytoplasmic	310	349	0.91