YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S1PR1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDLIARHYN FTGKFRKVHK DPGLKADSVV FIIVCCFIIL ENVLVLLTIW RTKKFHKPMY  60
   61 YFIGNLALSD LLAGVVYTAN ILLSGANTYK LTPTQWFFRE GSMFVALAAS VFSLLAIAIE 120
  121 RHLTMLKMKL HNNGKTCRVF MLISTVWFIA AILGGLPVMG WNCIDSMNNC STVLPLYHKA 180
  181 YILFCTTVFS VILMAIVILY ARIYALVRTR SRKLVFRKVA NGRGSNKSSE KSMALLKTVI 240
  241 IVLSCFIACW APLFILLLLD VACQTLTCSI LYKAEWFLAL AVLNSAMNPL IYTLTSNEMR 300
  301 RAFIKMLNCG VCVQPSGKFS RPIMGAEFSR SKSDNSSHPN KDEPEYSPRE TIVSSGNITS 360
  361 SS

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.95
Transmembrane Helix	29	50	0.93
Cytoplasmic	51	59	0.90
Transmembrane Helix	60	81	0.91
Non-Cytoplasmic	82	100	0.83
Transmembrane Helix	101	119	0.94
Cytoplasmic	120	138	0.85
Transmembrane Helix	139	159	0.95
Non-Cytoplasmic	160	179	0.91
Transmembrane Helix	180	204	0.91
Cytoplasmic	205	234	0.96
Transmembrane Helix	235	258	0.89
Non-Cytoplasmic	259	275	0.86
Transmembrane Helix	276	296	0.90
Cytoplasmic	297	362	0.96