YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50540046, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNNEETEGF DGEASNTSMI SGVNSPYQPT TEPVLSRNVF RAIRCDREYL KSHFGILKVI  60
   61 EVVLALISFI FIETIMMCSP CAGVYLFEFV SCSAFVVTGV LLLIFSLNLH TKVPHINWSL 120
  121 TDLINTATST FFFFLASVVL AALNHQSGAE IAAVIFGFLV MAVYALNTFL ASRRWRLGDT 180
  181 RDGPMQTSEY IRARTASRGE VESRPELQ

Type	Start	End	Confidence
Cytoplasmic	1	53	0.99
Transmembrane Helix	54	76	0.87
Non-Cytoplasmic	77	84	0.73
Transmembrane Helix	85	107	0.90
Cytoplasmic	108	122	0.78
Transmembrane Helix	123	143	0.93
Non-Cytoplasmic	144	150	0.78
Transmembrane Helix	151	171	0.94
Cytoplasmic	172	208	0.99