YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49900505, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLQVLGLFL GIVGWCLESS SINSSVWKSS SHGEAVVTAS SQFEGLWFSC ASNSLGAIHC  60
   61 QRFKTTLGLP GYIQACRALM IIALILGLLS VVLASMGLKC TKLGSTSEEA KGKISLTAGI 120
  121 MFILSGLCVI VAVSWYAARV VQEFNDPFYG GTKYELGAGL YLGWAAAALC ILGGGTLCTS 180
  181 FKGSSPAQTR GPGYNYSAAQ PQKIYRSAPS DNSITKAYV

Type	Start	End	Confidence
Cytoplasmic	1	5	0.39
Transmembrane Helix	6	25	0.49
Non-Cytoplasmic	26	77	0.77
Transmembrane Helix	78	98	0.92
Cytoplasmic	99	115	0.89
Transmembrane Helix	116	138	0.93
Non-Cytoplasmic	139	157	0.94
Transmembrane Helix	158	181	0.89
Cytoplasmic	182	219	0.98