YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NCLN_DANRE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.77
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEEAGEVLE NMLKVSFPLS LVLFLVLVCP LRAEAAHEFS VYRMQQYDLQ GQTYGSRNAI  60
   61 LNTEARTVEA EVLSRRCVMM RLADFSYEKY QKALRQSAGA VVIILPHNMS TLPQDIVQQF 120
  121 MELEPELLAT ETIVPVYFAL EDEELLSIYT QTQISSSSQG SSSAAEVLLH TATANGFQMV 180
  181 TSGAQSKAVS DWAITSLEGR LTGSGGEDLP TIVLVAHYDS FGVAPWLSYG ADSNGSGVAI 240
  241 LLELARLFSR LYSYKRTHAG YNLLFFLSGG GKFNYQGTKR WLEDNLDHTD ASLLQDNVAF 300
  301 VLCLDTLGNS DNLHLHVSKP PKEGSPQYTL LKELETVVAH QHPDLKFAMV HKKINLADDT 360
  361 LAWEHERFGI RRLPAFTLSH LESHRSPARH SIMDMRSVSP SLEGAGEATT GPHVDLGKLS 420
  421 RNTKVIAETL ARVIYNLTEK GVTGDLEIFT EQMQVQEDQL ASLVDWLTAQ PRAAQLLDKD 480
  481 SSIINTLEHQ LSRYLKDVKR HLVRADKRDP EFVFYDQLKQ TMNAYRVKPA IFDLLLAVCI 540
  541 ASYLGVLYLA IQNFGLLYGF LRRVTAPRVK QH

Type	Start	End	Confidence
Signal Peptide	1	35	0.89
N-region	1	26
H-region	27	32
C-region	33	35
Cleavage Site	35	36
Non-Cytoplasmic	36	533	0.92
Transmembrane Helix	534	560	0.68
Cytoplasmic	561	572	0.73