YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45598388, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSYNAKEE DGHHSGTAGL GGTAIRTRKP DNTAFKQQRL PAWQPILTAG TVLPAFFVIG  60
   61 LIFIPIGIGL YVTSNNIKEF EIDYTGTDMS SPCFNCSQSF SWNSTTPCKC TLSFSLDQPF 120
  121 ESNVFMYYGL SNFYQNHRRY VKSRDDSQLN GDERSLKEPS KECEPYRTND NKRIAPCGAI 180
  181 ANSMFNDTLD LFYIDPNGTK TQIPMIKKGI AWWTDKHVKF RNPGGNNPNL TAVFIDTAKP 240
  241 INWRKPVYEL DTDPENNGFI NEDFIVWMRT AALPTFRKLY RIIQKKNNMT PTLPRGNYSL 300
  301 EVTYNYPVRS FEGRKRMILS TISWMGGKNP FLGIAYITVG SICFFLGVVL LFIHHKYGNR 360
  361 NNSSDIPS

Type	Start	End	Confidence
Cytoplasmic	1	45	0.59
Transmembrane Helix	46	72	0.82
Non-Cytoplasmic	73	331	0.58
Transmembrane Helix	332	354	0.93
Cytoplasmic	355	368	0.56