YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45387709, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.98
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	373	0.99
Transmembrane Helix	374	396	0.93
Cytoplasmic	397	405	0.90
Transmembrane Helix	406	428	0.91
Non-Cytoplasmic	429	450	0.85
Transmembrane Helix	451	472	0.87
Cytoplasmic	473	492	0.86
Transmembrane Helix	493	513	0.93
Non-Cytoplasmic	514	536	0.91
Transmembrane Helix	537	560	0.93
Cytoplasmic	561	580	0.92
Transmembrane Helix	581	604	0.90
Non-Cytoplasmic	605	615	0.85
Transmembrane Helix	616	637	0.81
Cytoplasmic	638	708	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRSALLLVF LLLTSFCCGV CFECPEICRC SQKSITCNSA TGSQKSLSRL VLNYISVKTI  60
   61 SSRSFDGLKG VRRIEIAQSS SVETIESEAF NNLPNVSEIS IQNTRNLVHI QQRAFNQLPK 120
  121 LRYLSISNTG ISVFPDLTSI FSLEAHFILD ICDNLNLRSV PSNAFTGMTS EYATMNLFNN 180
  181 GFQEIESHAF NGTKIDKLVL KNSRDLRVVH EDAFKGALGP TVLDVSSTAL ETLPSHGLES 240
  241 VLMLTARSAF ALKKLPPLKS LKSLREAQLT FPSHCCALIN WDNSRDGSVN SALRNRSSYC 300
  301 GDNSSPADLS AISSDDSLES DVIGSSSVED TFGSIDFHYP DLDLCQQRQA LQCSPEADAF 360
  361 NPCEDIAGFS FLRVAIWFIN ILAIAGNLVV LLVLFTSRCK LTVPRFLMCH LAFADLCIGI 420
  421 YLLMIATVDL RTRGHYSHHA IEWQTGAGCD IAGFLSVFGG ELSIYTLSTI TVERWHTITH 480
  481 ALRLERRLGL SQASLIMTIG WLLCLAMALL PLIGVSSYSK VSMCLPMDIE TPLSQAYVIL 540
  541 LLLFNVGAFL VICGCYVCIY SAVRNPEFPG RAADAKIAKR MAVLIFTDFL CMAPISFFAI 600
  601 SAAFKVPLIT VTNSKILLVL FYPINSCANP FLYAIFTRAF RKDACILLSS MGCCQSKANL 660
  661 YRMKTYCSEN INRSKSSSGS NANSKGPRAV MWMSSFPQLT PRPHIQRV