YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCAM5_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAENNFPPLP RFIPLKPCFY QDFNEIPDQH RTMCKRLYYL WILNSATLAV NLIGCLAWMC  60
   61 GGGGATNFGM AILWLILFTP CSYVCWFRPI YKAFKSDSSF NFMAFFFVFM AQVVISIIQT 120
  121 VGIPGWGVCG WLATITFFST NIGSAVVMLI PTIMFTAVAV LSFIALTKVH NFYRGSGGSM 180
  181 SKAQEEWTSG AWKNPHVQQA AQQAAMGAAQ GAMQGQQYSA APTYNYDDPM

Type	Start	End	Confidence
Cytoplasmic	1	38	0.98
Transmembrane Helix	39	60	0.95
Non-Cytoplasmic	61	67	0.79
Transmembrane Helix	68	87	0.94
Cytoplasmic	88	101	0.79
Transmembrane Helix	102	123	0.92
Non-Cytoplasmic	124	141	0.80
Transmembrane Helix	142	166	0.86
Cytoplasmic	167	230	0.96