YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45387607, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFPNDSIGF TDPRHFHLYN ESLFQNNFST FNESDSFFPK GFKITIAVVY MIVCVVGLVG  60
   61 NCLVMYVIIR YTKMKTATNI YIFNLALADA LVLATLPFQG TDVFLGFWPF GNALCKVVVS 120
  121 IDYYNMFTSV FTLTVMSMDR YVAVCHPVKA LDMRTPHKAK VVNICVWVLA SAIGVPAMVL 180
  181 GDVEQDNGES IECILVLPDP RSYWDPVFGT CVFLLSFLIP VAIISVCYSL MVKRLRSVRI 240
  241 LSGSKEKDRN LRRITRMVLV VVAAFVVCWT PIQIMALAQS LGFNLASVQT VVFMHFCIAL 300
  301 GYVNSSLNPV LYAFLDENFK RCFREFCHPS RFGIDAQQSG RMRHITREVA FNCKTTDGNS 360
  361 NPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.96
Transmembrane Helix	46	69	0.93
Cytoplasmic	70	79	0.85
Transmembrane Helix	80	100	0.92
Non-Cytoplasmic	101	120	0.80
Transmembrane Helix	121	143	0.73
Cytoplasmic	144	160	0.88
Transmembrane Helix	161	180	0.94
Non-Cytoplasmic	181	209	0.93
Transmembrane Helix	210	232	0.93
Cytoplasmic	233	252	0.97
Transmembrane Helix	253	275	0.90
Non-Cytoplasmic	276	290	0.74
Transmembrane Helix	291	314	0.79
Cytoplasmic	315	363	0.96