YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46391081, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWAFLQGLL SGVNKYSTAF GRVWLSIVFL FRVMVFVVAA EKVWGDEQKD FACNTAQPGC  60
   61 HNVCYDHFFP VSHIRLWALQ LIFVTCPSFM VVLHVAYRDE RERKNRLKYG EGCKRLYDNT 120
  121 GKKRGGLWWT YVLSLVFKMG VDATFVYLLY HIYEGYDFPV LVKCSEAPCP NIVDCFISRP 180
  181 TEKRIFTIFM VVTSLVCILL SLFEILYLVG KRCFECINRV QSSRHVNRER SMANLTNSNA 240
  241 HLESNNKKLA SKDQPAPAYS VVMSAKKKTS LENTFNPSWT LRDDKCSTSH SLGSECERD

Type	Start	End	Confidence
Cytoplasmic	1	19	0.94
Transmembrane Helix	20	40	0.91
Non-Cytoplasmic	41	75	0.97
Transmembrane Helix	76	97	0.95
Cytoplasmic	98	126	0.97
Transmembrane Helix	127	150	0.80
Non-Cytoplasmic	151	185	0.86
Transmembrane Helix	186	209	0.91
Cytoplasmic	210	299	0.89