YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116805724, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNELKSKAFW RAVLAELLGM TLFIFLSITA AVGNTNTQNP DQEIKVALAF GLSIATLAQS  60
   61 LGHISGAHLN PAVTLGLLAS CQISLLRAVM YILAQMIGAT VASAIVLGVS KGDALGLNQI 120
  121 HTDISAGQGV GIELLATFQL VLCVLATTDK RRRDVSGSAP LAIGLSVCLG HLTAISFTGC 180
  181 GINPARTFGP AMIRLDFANH WVYWVGPMCG GVAAALIYDF LLYPKMDDFP ERVRVLVSGP 240
  241 ATDYEVNGTD DPPAVEMSSK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	32	0.88
Non-Cytoplasmic	33	46	0.88
Transmembrane Helix	47	67	0.72
Cytoplasmic	68	87	0.61
Transmembrane Helix	88	109	0.88
Non-Cytoplasmic	110	125	0.87
Transmembrane Helix	126	148	0.87
Cytoplasmic	149	158	0.86
Transmembrane Helix	159	182	0.85
Non-Cytoplasmic	183	200	0.91
Transmembrane Helix	201	222	0.95
Cytoplasmic	223	260	0.97