YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41055494, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSSTWNFIK RHKRKFIFTG VFVGGVYLLG KYAQRKIQEM QEREAAEYIA QARRQFHFES  60
   61 NQRTCNMTVL SMLPTLREAI IHHLNSESLT TLLKTKPANK LEIWEDLKII SFTRSIVAVY 120
  121 STCMLVVLLR VQLNIIGGYL YLDNSVTKNG MTPLAPPDVQ QQYLSSIQHL LGEGLMELIT 180
  181 VVKKAVQEVF GLVSLKQSLS LQELEQQLTQ IRQLVEDDSS KYKGLSWYMM PDEENTLASQ 240
  241 ACGLTENDVT TIKLLNETRD MLESPDFNIV LHTCLNRGFV RFLDNMAEFF RPPQRDSTPS 300
  301 STPDQLSHVS LPLAKIIPII NGQIHSICSE IPSHFVQDLL LIDQVKEFAA NVYETFSTPQ 360
  361 ELQK

Type	Start	End	Confidence
Cytoplasmic	1	15	0.67
Transmembrane Helix	16	33	0.71
Non-Cytoplasmic	34	364	0.97