YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S2539_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDRPAVRIS AAITPVQQML ASGTGAVLTS LFVTPLDVVK IRLQAQQTPL FQAIAAESRP  60
   61 WFRVTRPSKW KCFLYCNGLM DHVYVCQNMS SCSNLYKTST HFSGTLDAFV KITHNEGLRS 120
  121 LWSGLPPTLV MAVPATVIYF TCYDQLRDFL CYSMGYHGDH IPLIAGGLAR LGAVSVISPL 180
  181 ELVRTKMQSR RLQYSELMVC IRSSVAQDGW LSLWRGWGPT VLRDVPFSAL YWFNYELVKA 240
  241 QLCEHYRTPQ ASFTISFTAG AVSGAIAAVL TLPFDVVKTR RQIQLGEMEA LGAVSMKKPS 300
  301 STWNMMRNIW IDMGYKGLFA GFLPRVIKVA PACAVMISTY EFGKTFFQER NLHQARCGL

Type	Start	End	Confidence
Cytoplasmic	1	120	0.79
Transmembrane Helix	121	142	0.84
Non-Cytoplasmic	143	160	0.90
Transmembrane Helix	161	183	0.82
Cytoplasmic	184	203	0.78
Transmembrane Helix	204	218	0.32
Non-Cytoplasmic	219	252	0.46
Transmembrane Helix	253	274	0.84
Cytoplasmic	275	359	0.52