YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MAGT1_DANRE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHKLLIVVF LVVCLHDMRL NGQKKKETLL SEKVSQMMEW VSKRAVVRLN GEKFKRLVRA  60
   61 HPRNYSVIVM FTALQPQRQC GVCRQADEEY QILANSWRYS SAFTNRIFFA MVDFDEGSDV 120
  121 FQMLNMNSAP TFINFPAKGK PKRADTYELQ VRGFAAEQLA RWVADRTDVH IRVIRPPNYA 180
  181 GPLMLGLLLA FIGSLAYLRR NNLEFLFNKN VWAFSALCFV LIMTSGQMWN HIRGPPYAHK 240
  241 NPNTGQVSYI HGSSQAQFVA ETHIVLLFNA AVTIGMVLLH EAATSGLDIV KRKIMCVAGI 300
  301 GLVVLFFSWL LSVFRAKYHG YPYSFLFG

Type	Start	End	Confidence
Signal Peptide	1	22	0.95
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	178	0.99
Transmembrane Helix	179	198	0.96
Cytoplasmic	199	209	0.80
Transmembrane Helix	210	229	0.92
Non-Cytoplasmic	230	258	0.96
Transmembrane Helix	259	280	0.88
Cytoplasmic	281	293	0.82
Transmembrane Helix	294	314	0.93
Non-Cytoplasmic	315	328	0.90