YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC5AC_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.87
Transmembrane Helix	12	31	0.97
Cytoplasmic	32	50	0.92
Transmembrane Helix	51	71	0.94
Non-Cytoplasmic	72	81	0.75
Transmembrane Helix	82	105	0.87
Cytoplasmic	106	125	0.89
Transmembrane Helix	126	149	0.86
Non-Cytoplasmic	150	158	0.78
Transmembrane Helix	159	179	0.89
Cytoplasmic	180	186	0.69
Transmembrane Helix	187	206	0.90
Non-Cytoplasmic	207	236	0.92
Transmembrane Helix	237	257	0.92
Cytoplasmic	258	276	0.91
Transmembrane Helix	277	299	0.94
Non-Cytoplasmic	300	327	0.89
Transmembrane Helix	328	351	0.80
Cytoplasmic	352	379	0.86
Transmembrane Helix	380	403	0.87
Non-Cytoplasmic	404	409	0.78
Transmembrane Helix	410	431	0.93
Cytoplasmic	432	439	0.77
Transmembrane Helix	440	460	0.95
Non-Cytoplasmic	461	509	0.96
Transmembrane Helix	510	532	0.93
Cytoplasmic	533	623	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METVGRFQAG DYVVFACLFV VSSGIGVFFA IKERNKAPSK EFLVGGRQMS CGPVALSLTA  60
   61 SFMSAVTVIG APADVYRFGA SYVIFGVAYT FVVFFTAELF LPVFYRSGIT STYEYLELRF 120
  121 CKLVRVAATL IYIIQTILYT GVVVYAPALA LNQVTGFDLW GSIFATGIVC TFYCTLGGLK 180
  181 AVVWTDAFQM VVMVVGFLTV LIQGSSRAGG IENVWSTSRT GGRLQVFDFD VSPLRRHTFW 240
  241 TLSVGGTFTW LGIYGVNQST IQRCISCKTE GHARWALYLN LLGLWIILFC AVVSGLIMYS 300
  301 YYSHCDPWSS GLISAPDQLM PYFVMEILGA FPGLPGLFVA CAFSGTLSTV AASINALATV 360
  361 MYEDFVSQCF PDLSNRAASW ISKALCVAFG VACTTMAVAA SYMGGIVQAA LSIHGMCGGP 420
  421 VLGLFSLGIL FPFTNLKGAV GGLIVGISLS FWVGVGAFIY PAPSNNTHAL ELNTAGCNIT 480
  481 AAAFEPTSAT VTQLTSDRNW LADSWYSMSY LYYSAVGFIG TVAAGLLITL LTGPMDPKLL 540
  541 KPGMTRSVKE VMCFCTEKFT EADLGEGKED VGDFGKAWEK HPDQGCTLRM DEKFRCSCDN 600
  601 QQENGNTNAG FDHNETSIVQ KKL