YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ELOV6_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVLALQEYE FERQFNEDEA IRWMQENWKK SFLFSALYAA CILGGRHVMK QREKFELRKP  60
   61 LVLWSLTLAA FSIFGAIRTG GYMVNILMTK GLKQSVCDQS FYNGPVSKFW AYAFVLSKAP 120
  121 ELGDTLFIVL RKQKLIFLHW YHHITVLLYS WYSYKDMVAG GGWFMTMNYL VHAVMYSYYA 180
  181 LRAAGFKISR KFAMFITLTQ ITQMVMGCVV NYLVYLWMQQ GQECPSHVQN IVWSSLMYLS 240
  241 YFVLFCQFFF EAYITKRKSN AAKKSQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.62
Transmembrane Helix	31	49	0.74
Cytoplasmic	50	60	0.77
Transmembrane Helix	61	82	0.90
Non-Cytoplasmic	83	108	0.81
Transmembrane Helix	109	128	0.48
Cytoplasmic	129	135	0.56
Transmembrane Helix	136	153	0.62
Non-Cytoplasmic	154	159	0.78
Transmembrane Helix	160	180	0.89
Cytoplasmic	181	191	0.86
Transmembrane Helix	192	216	0.87
Non-Cytoplasmic	217	230	0.93
Transmembrane Helix	231	254	0.84
Cytoplasmic	255	266	0.96