YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32766309, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METFSHRVNS YIDSWMGPRD LRVTGWFLLD DYIPTFIFTV MYLLIVWMGP KYMKNRQAYS  60
   61 CRALLVPYNL CLTLLSLYMF YELVMSVYQG GYNFFCQNTH SGGDADNRMM NVLWWYYFSK 120
  121 LIEFMDTFFF ILRKNNHQIT FLHVYHHATM LNIWWFVMNW VPCGHSYFGA TFNSFIHVLM 180
  181 YSYYGLSAVP ALRPYLWWKK YITQGQLVQF VLTMFQTSCA VVWPCGFPMG WLYFQISYMV 240
  241 TLILLFSNFY IQTYKKRSGS RKSDYPNGSV NGHTNGVMSS EKIKHRKARA D

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.90
Transmembrane Helix	32	49	0.92
Cytoplasmic	50	63	0.77
Transmembrane Helix	64	85	0.86
Non-Cytoplasmic	86	112	0.94
Transmembrane Helix	113	132	0.91
Cytoplasmic	133	141	0.82
Transmembrane Helix	142	158	0.81
Non-Cytoplasmic	159	174	0.55
Transmembrane Helix	175	197	0.79
Cytoplasmic	198	206	0.83
Transmembrane Helix	207	227	0.90
Non-Cytoplasmic	228	231	0.84
Transmembrane Helix	232	252	0.92
Cytoplasmic	253	291	0.98