YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28279539, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGESLLDRK PAPDCCGGFN NLEFSQMDVS VLWELWSLVD LTEPRFCVAV IAIIFNPFFW  60
   61 NVVARWEHRT RGLTRLFGGP YVACYSLAVL ILLLNVYRSH SVTVAMKGQS RWDLLENLQV 120
  121 YYAGAALMAV GSLLVISSFL ALGVTGTFLG DYFGILMDQK VTGFPFNVMD NPMYWGSTAN 180
  181 YLGLALMNAS PIGIVLTAVV ALSYKVAIAY EGPFTQEIYR QRSQRCKHK

Type	Start	End	Confidence
Cytoplasmic	1	44	0.83
Transmembrane Helix	45	64	0.88
Non-Cytoplasmic	65	76	0.78
Transmembrane Helix	77	97	0.92
Cytoplasmic	98	117	0.81
Transmembrane Helix	118	144	0.86
Non-Cytoplasmic	145	180	0.81
Transmembrane Helix	181	204	0.84
Cytoplasmic	205	229	0.87