YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169158069, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.93
Transmembrane Helix	31	54	0.87
Cytoplasmic	55	66	0.92
Transmembrane Helix	67	90	0.90
Non-Cytoplasmic	91	97	0.77
Transmembrane Helix	98	120	0.93
Cytoplasmic	121	129	0.87
Transmembrane Helix	130	153	0.89
Non-Cytoplasmic	154	164	0.78
Transmembrane Helix	165	183	0.95
Cytoplasmic	184	193	0.87
Transmembrane Helix	194	217	0.89
Non-Cytoplasmic	218	226	0.77
Transmembrane Helix	227	249	0.90
Cytoplasmic	250	258	0.88
Transmembrane Helix	259	279	0.61
Non-Cytoplasmic	280	287	0.54
Transmembrane Helix	288	310	0.86
Cytoplasmic	311	361	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCTLEPVCPV NATICTGTSC LVPRDPFNDI LSVVMSVAIT VMLAMVMFSM GCTVEARKLW  60
   61 GHVRRPWGIF IGFLCQFGIM PFTAFILSLL FNVLPVQAVV IIIMGCCPGG SSSNVFCYWL 120
  121 DGDMDLSISM TACSSILALG MMPLCLLIYT TIWTAGDAIQ IPYDNIGITL VSLLVPVGLG 180
  181 MLVKHKWPKA AKKILKVGSV VGIVLIIVIA VIGGVLYQSS WTIAPSLWII GTIYPFIGFG 240
  241 LGFLLARFVG QPWHRCRTIA LETGMQNAQL ASTITQLSFS PAELEVMFAF PLIYSIFQLV 300
  301 VAGIAVSIHY SIKRCRHQTL VEEDGEGTTE DCDKHSYSLE NGGFSCDENG NNQNKDKGTK 360
  361 L