YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41055548, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNRLNLCFF ILSYMCMCLS AQYVPPFTED CRSGMYPPNG PTFKGDVSWY TVDLDLPASK  60
   61 RWTDVISDKK TEMASMIQAI RDLADAFVPS GKLIQLVDKD LPLMVDTLPY PFNEEIRGIA 120
  121 SVSGVPLGEV VLFNIFYEVF TVCTSLVAED VNGNLIHARN LDFGLFMGWD LKNRSWVITE 180
  181 KLKPLVVNID FTRNGQTVFK STNFAGYVGM LTGIHQNSFT LTMNERFSLD GGYIGILEWI 240
  241 LGKRDGMWMS FLTRSVLENA TSYESAKALL SDTKLLAPAY FILGGNQSGE ACIITRSRTQ 300
  301 NISPLELNVK NGRWYVLETN YDHWKEPLFL DDRRTPAMKC MNQTTQTNIS VKTVYDVLST 360
  361 KPVLNKLTTY TTLMEVSKGT LESFIRDCPN PCMPW

Type	Start	End	Confidence
Signal Peptide	1	21	0.94
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	395	0.99