YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PCFT_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.66
Transmembrane Helix	43	62	0.55
Non-Cytoplasmic	63	104	0.91
Transmembrane Helix	105	127	0.90
Cytoplasmic	128	134	0.89
Transmembrane Helix	135	155	0.94
Non-Cytoplasmic	156	163	0.77
Transmembrane Helix	164	189	0.86
Cytoplasmic	190	198	0.90
Transmembrane Helix	199	220	0.91
Non-Cytoplasmic	221	228	0.81
Transmembrane Helix	229	251	0.87
Cytoplasmic	252	286	0.96
Transmembrane Helix	287	310	0.88
Non-Cytoplasmic	311	362	0.52
Transmembrane Helix	363	395	0.78
Cytoplasmic	396	409	0.86
Transmembrane Helix	410	433	0.89
Non-Cytoplasmic	434	443	0.82
Transmembrane Helix	444	465	0.93
Cytoplasmic	466	481	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDSDTSAIL AEDSESVDSR TVCRCFRVTE NKAPPPCSCP LSVTVEPVMF LSTFSIVLQA  60
   61 PLCTQYLWDR LSEDVGYNGT KTGGCNASTV HDPLQTEVET LTAHWSLYIN LGGFLVGLFM 120
  121 VILLGSWSDR AGRRLVLIIP SLGLAVQAAV YLTVMYLKLP VFWFLIGRIC SGLSGDFNAI 180
  181 LAGCFAYVAD TSERGSRTFR VAILEACLGL AGMFASIIGG QWRRAQGYIN PFWLVLATNL 240
  241 TAALYAYLFV PETVTPDPQA RLFSTRHHQA VCRLYSSDAP PGRRSKLWLY ILCFFLVVTV 300
  301 HLGCSDLYVL YELSAPLCWG PELIGYGSAA KHLAYLTSLT GLRAMQCCLE DSWVALVGLT 360
  361 SNMVGLVVIS VADTTALMFT GYGLCFLFMA STPVLRSKLS KLVDPAEQGA LFASVACVEG 420
  421 LCSLVSSGVF NALYPATLHF MKGFPFVFGA AILLIPAGII GGLGCQEKRE SRENREGFGI 480
  481 S