YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18858251, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.82
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFASLLTLAL LLATFAADPS HGEVETRECL YYNVNWEVEK TNRSGVERCE GEKDKRSHCY  60
   61 ASWRNNSGSI QLVKKGCWLD DFNCYDRQEC VATEENPQVF FCCCEGNFCN ERFTHLPDIS 120
  121 GPVISPPPVS PSLLNVLVYS LLPLSMLSMA VLLAFWMYRH RKPPYGHVDV NEDPGPSPPS 180
  181 PLVGLKPLQL LEVKARGRFG CVWKAQMINE YVAVKIFPIQ DKLSWQNERE MFSTPGMKHD 240
  241 NLLRFIAAEK RGSNLEMEFW LITEFHERGS LTDYLKGNAV SWADLCVIAE SMACGLAYLH 300
  301 EDVPRSKGEG PKPAIAHRDF KSKNVMLKMD LTAVIGDFGL AVRFEPGKPP GDTHGQVGTR 360
  361 RYMAPEVLEG AINFQRDSFL RIDMYAMGLV LWELVSRCKA ADGPVDEYML PFEEEIGQHP 420
  421 SLEDLQDAVV HKKLRPAFKD CWLKHSGLCQ MCETMEECWD HDAEARLSAG CVQERISQIR 480
  481 RVSSSTSDCL FSMVTSLTNV DLPPKESSI

Type	Start	End	Confidence
Signal Peptide	1	22	0.94
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	135	0.99
Transmembrane Helix	136	157	0.77
Cytoplasmic	158	509	0.76