YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125846815, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDWGFLSSL LDKVQSHSTV VGKIWMSVLF IFRILVLGAA AESVWGDEQS SLVCNTLQPG  60
   61 CENVCYDWQF PISHIRFWVL QIIFVSTPTL VYLGHAVQVI HNENKLREKK KILGDGHMLK 120
  121 EPKYTDSQGH VKIKGNLLGS YLTQLFFKII LEIAFIVGQY YLYGFIMVAK FTCSRSPCPY 180
  181 TVECFMSRPT EKTIFIIFML AVACVSLLLN VIEVFYLLFT RVGCRKRRSH TVTTAKNPAS 240
  241 LSSSWQMNSE DALKQNKLNK QFESGQSLGG SLDGAKEDMQ LMEDH

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	41	0.92
Non-Cytoplasmic	42	76	0.94
Transmembrane Helix	77	99	0.90
Cytoplasmic	100	140	0.94
Transmembrane Helix	141	162	0.81
Non-Cytoplasmic	163	194	0.90
Transmembrane Helix	195	219	0.95
Cytoplasmic	220	285	0.96