YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28911887, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGVLGRLS TLTLSLQQLG QLPHLSNWLP RLPRRQATVH ASEVPSLFRE PYILSGYRPV  60
   61 HQEWRSYFCS LFQCHNELLN VWTHLLAIPA VLLQFSFFAG AWGLTLNLAS LPLFLYVLSS 120
  121 LTYLSFSVAA HLLQSHSELA HYSLFFVDYV GVAVYQYGCS MGHYFYCSEP EWRHSLVGVL 180
  181 FLPGAAMLAW LSCASCCYSK FRYRRPYPFH RKICQIIPTS LAYLLDISPV AHRLLTKSWD 240
  241 EPVLVFHAMQ VAFFLLAALF FSCPVPERFF PGRCDIVGHG HQIFHIFLVL CTMCQLEAMF 300
  301 RDFLVHQQSV VDAHGEHFIL LAGGSFFLLV LCSILTAVLM RGAVQRQLRK KD

Type	Start	End	Confidence
Cytoplasmic	1	80	0.93
Transmembrane Helix	81	104	0.86
Non-Cytoplasmic	105	111	0.70
Transmembrane Helix	112	133	0.90
Cytoplasmic	134	143	0.72
Transmembrane Helix	144	165	0.81
Non-Cytoplasmic	166	175	0.84
Transmembrane Helix	176	198	0.88
Cytoplasmic	199	212	0.86
Transmembrane Helix	213	235	0.82
Non-Cytoplasmic	236	242	0.92
Transmembrane Helix	243	265	0.88
Cytoplasmic	266	280	0.84
Transmembrane Helix	281	300	0.89
Non-Cytoplasmic	301	317	0.89
Transmembrane Helix	318	340	0.93
Cytoplasmic	341	352	0.90