YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34098957, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPEEFTSSV TLHPPNASVT PAYLDFFNST EWRLVFSIIP PYIFIVCLMG ILGNSFVLLV  60
   61 FLLQRGRWSV PEIYLGNLAL ADLIFTSLCL PFWAMNILNY FMWLYGEFMC KVVNMSIMVN 120
  121 MYTSIYMLVM VNVDRYLALV LTMRARWLRR KRYAKLICVI LWLFGLGMGA PTAAMRKLID 180
  181 IPAHQSVECM LNYPNRNWRI AHLLQLNIVG FALPFLVITF CCFNIVQALK RRRDSGYWED 240
  241 GNDRKATILV CAVTFLFFFC WGPFHFLTFL DLLCDLKVLD EKEWAHFLNI GNQFSVYLAF 300
  301 SNSCLNPVLY VCSGNYFRRK VSSIYKRRKQ SSDATTLQRT ALTSTTTTNQ IKPVVLNEKD 360
  361

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.90
Transmembrane Helix	41	63	0.93
Cytoplasmic	64	72	0.94
Transmembrane Helix	73	95	0.90
Non-Cytoplasmic	96	115	0.80
Transmembrane Helix	116	138	0.77
Cytoplasmic	139	152	0.89
Transmembrane Helix	153	174	0.92
Non-Cytoplasmic	175	202	0.95
Transmembrane Helix	203	226	0.89
Cytoplasmic	227	245	0.93
Transmembrane Helix	246	267	0.92
Non-Cytoplasmic	268	293	0.96
Transmembrane Helix	294	317	0.85
Cytoplasmic	318	360	0.93