YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27368152, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVFTAYAFN ESFFENASRD FNATEQGGRH QYNYYAMLLT LLIFVIVFGN VLVCMAVSRE  60
   61 KALQTTTNYL IVSLAVADLL VATLVMPWVV YLEVVGEWRF STIHCDIFVT LDVMMCTASI 120
  121 LNLCAISIDR YTAVAMPMLY NTRYSSKRRV TVMISVVWIL SFAISCPLLF GLNNTVTHDD 180
  181 ALCVIANPAF VVYSSIVSFY VPFIITLLVY VQIYVVLRKR RKRVNTKRTC PVTDMDMSST 240
  241 IKKCTHPDDV KLCTVIVKSS GNCPVNNKNV IFIKEVVNNG DDIQMDEITN RNPSRQRKQD 300
  301 QSGGSQQNSR LVNSNLRETD ISPPSPEAGV KPERNGNTSS ITKGAKAFEI QVSPTGKTQT 360
  361 SVKTLNKRKI SQQKEKKATQ MLAIVLGVFI ICWLPFFITH IVNTYCQVPP ELYTAFTWLG 420
  421 YVNSAVNPII YTTFNIEFRK AFIKILHC

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.97
Transmembrane Helix	35	57	0.91
Cytoplasmic	58	68	0.83
Transmembrane Helix	69	90	0.93
Non-Cytoplasmic	91	107	0.88
Transmembrane Helix	108	129	0.90
Cytoplasmic	130	149	0.90
Transmembrane Helix	150	172	0.92
Non-Cytoplasmic	173	195	0.86
Transmembrane Helix	196	217	0.90
Cytoplasmic	218	377	0.99
Transmembrane Helix	378	401	0.88
Non-Cytoplasmic	402	413	0.89
Transmembrane Helix	414	435	0.85
Cytoplasmic	436	448	0.89