YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27368150, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMFSSGEWL WNDSEHSFTP GGNYSPASGV EEAKRNYYAM LYSLLILAIV FGNVLVCIAV  60
   61 LRERALQTTT NYLVVSLAVA DLLVASLVMP WAVYLEVVGG AWLFSRLYCN VFVTLDVMMC 120
  121 TASILNLCAI SIDRYTAVVM PVLYNTTHSS RKRVSVMIAT VWVLAFAVSC PLLFGFNTTD 180
  181 DPAVCSISNP DFVIYSSVVS FYLPFAVTLL VYVRIYIFLR RRRKKITFRQ GSGKVQPASA 240
  241 PPSVETCLQD DAHKEKRDLS PIRINVITES KEQVIRPRLL ANCLRRKRPQ TAPAENSLLP 300
  301 PVITLNYCSI SQASFARTEQ DANREEEEGG DEEQVAVRGC EVKKLANGRT HTSLRPPRAA 360
  361 HAMVCPSQAR CRSMHSKEKK ATQMLAIVLG VFLICWLPFF VTHILNTHCR ACHIPPEVYS 420
  421 AFTWLGYVNS ALNPVIYTTF NIEFRRAFIK ILSC

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.94
Transmembrane Helix	39	61	0.92
Cytoplasmic	62	71	0.83
Transmembrane Helix	72	94	0.92
Non-Cytoplasmic	95	111	0.81
Transmembrane Helix	112	132	0.86
Cytoplasmic	133	153	0.88
Transmembrane Helix	154	176	0.90
Non-Cytoplasmic	177	193	0.92
Transmembrane Helix	194	218	0.86
Cytoplasmic	219	381	0.99
Transmembrane Helix	382	404	0.89
Non-Cytoplasmic	405	420	0.91
Transmembrane Helix	421	441	0.84
Cytoplasmic	442	454	0.85