YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33504559, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSNVVQIFK EDKCPSSHPE KCLPNFTWQS AVSDIYNSSL NESWTTEQEA MSPLIPIITA  60
   61 VYSVVFVVGL VGNCLVMYVI IRHTKMKTAT NIYIFNLRVA DALVTTTMPF QSTDYLLNSW 120
  121 PFGEVVCKVF ISIDYYNMFT SIFTLTMMSV DRYVAVCHPV KALDFRTPMK AKIINILIWV 180
  181 LSSAAGIPAM VLGSTQTNNG TTECALQFPD PYVYWDTLMK ICVFIFGFVA PLLIITVCYT 240
  241 LMVLRLKSVR LLSGSREKDR NLRRITRLVL VVVAVFVVCW TPIHIFILVK ALSHGVPETT 300
  301 SVMAAYFFCV ALGYTNSSLN PILYAFLDEN FKRCFRDFCC PGRTAGDGRG VSRVRSTLRE 360
  361 HTCPAEAKND GGQGRPV

Type	Start	End	Confidence
Non-Cytoplasmic	1	57	0.88
Transmembrane Helix	58	81	0.90
Cytoplasmic	82	93	0.82
Transmembrane Helix	94	112	0.48
Non-Cytoplasmic	113	134	0.50
Transmembrane Helix	135	155	0.49
Cytoplasmic	156	172	0.92
Transmembrane Helix	173	192	0.93
Non-Cytoplasmic	193	220	0.91
Transmembrane Helix	221	244	0.93
Cytoplasmic	245	264	0.95
Transmembrane Helix	265	287	0.93
Non-Cytoplasmic	288	302	0.85
Transmembrane Helix	303	326	0.84
Cytoplasmic	327	377	0.96