YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24571207, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPECDGVGCA SPARRDRQRA RGGFLSRRER RGATQRIYLL FILLLLMFTP SVDSSWWYIG  60
   61 ALGARVICDN IPGLVNKQRQ LCQRHPDLMQ SIGQGAKEWI RECQHQFRHH RWNCSTLERD 120
  121 HTVFGRVMLR SSREAAFVYA ISSAGVVYAI TRACSQGELK ICSCDSQRRG RASDEDGDFD 180
  181 WGGCSDNINY GIKFAKAFVD ARERMVKDAR ALMNLHNNRC GRMAVKRFMK TECKCHGVSG 240
  241 SCALRTCWLA MPDFRRTGDY LRKKYNAAVE VMMNQDGTGF MVADRDYKRT TKNDLVYIEN 300
  301 SPDYCLMDRS AGSLGTSGRV CNKSSRGMDG CEIMCCGRGY DTTRVNRMTK CECKFKWCCA 360
  361 VECRDCEETV DVHTCKLHKK PDWLDLT

Type	Start	End	Confidence
Cytoplasmic	1	36	0.92
Transmembrane Helix	37	57	0.86
Non-Cytoplasmic	58	387	0.80