YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28827142, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDSHLQFLK GQKSVNSTSL PPNGSLADSP AGTLCEQVQI QAEVFLTLGI VSLLENILVI  60
   61 SAVVKNKNLH SPMYFFLCSL AAADMLVSVS NSLETIVIAV LNSRLLVASD QLCRLMHNVC 120
  121 DSMICISLVA SICNLLAIAV DRYVTIFYAL RYHSIVTVRR ALVAIAVIWL VCVVCGIVFI 180
  181 VYSESKTVIV CLITMFFAML VLMATLYVHM FLLARLHVQR IAALPPAAPG AGNPAPRQRS 240
  241 CMKGAVTISI LLGVFVCCWA PFFLHLILLV SCPHHPLCLC YMSHFTTYLV LIMCNSVIDP 300
  301 LIYACRSLEM RKTFKEILCC FGCQPAL

Type	Start	End	Confidence
Cytoplasmic	1	72	0.61
Transmembrane Helix	73	98	0.69
Non-Cytoplasmic	99	121	0.76
Transmembrane Helix	122	140	0.85
Cytoplasmic	141	160	0.75
Transmembrane Helix	161	182	0.95
Non-Cytoplasmic	183	188	0.80
Transmembrane Helix	189	211	0.93
Cytoplasmic	212	244	0.90
Transmembrane Helix	245	268	0.90
Non-Cytoplasmic	269	283	0.85
Transmembrane Helix	284	305	0.88
Cytoplasmic	306	327	0.96