YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28827140, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPSAESPSS IHTDCAEVQV PGQVFLVIAV ASLSENLLVI VAVIKNKNLH SPMYCFICNL  60
   61 AVFNTISSFS KALENILLLF KDAGRLNLRG PFELKIDDIM DSLLCMCFLS SIFSILAIAV 120
  121 DRYISIFHAL RYHMLMTMRR VLIILFTIWV LCGTSGALMV GFFEAATVTI FFIVLFFTAL 180
  181 LLILLLYVHM FLLARHHANR IASMPGAQAQ HRKSGLRGAL TLTIKKGVFV ACWAPFSLHL 240
  241 LIMMICPENQ YCECYRSLFQ LHVVLLVSHA VIDPAINAFR SVELRNTYKK QLLSSASRIC 300
  301 KRCA

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.68
Transmembrane Helix	21	44	0.67
Cytoplasmic	45	52	0.71
Transmembrane Helix	53	70	0.82
Non-Cytoplasmic	71	98	0.90
Transmembrane Helix	99	120	0.90
Cytoplasmic	121	140	0.87
Transmembrane Helix	141	162	0.94
Non-Cytoplasmic	163	169	0.74
Transmembrane Helix	170	193	0.91
Cytoplasmic	194	221	0.96
Transmembrane Helix	222	243	0.71
Non-Cytoplasmic	244	257	0.70
Transmembrane Helix	258	279	0.49
Cytoplasmic	280	304	0.70