YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30725834, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDSSRHHFS MKHMDYMYNA DNNITLNSNS TASDINVTGI AQIMIPQELF LMLGLISLVE  60
   61 NILVVVAIIK NRNLHSPMYY FICCLAVADM LVSVSNVVET LFMLLTEHGL LLVTAKMLQH 120
  121 LDNVIDIMIC SSVVSSLSFL CTIAADRYIT IFYALRYHSI MTTQRAVGII LVVWLASITS 180
  181 SSLFIVYHTD NAVIACLVTF FGVTLVFTAV LYLHMFILAH VHSRRITALH KSRRQTTSMK 240
  241 GAITLTILLG VFILCWGPFF LHLILILTCP TNPYCKCYFS HFNLFLILII CNSLIDPLIY 300
  301 AYRSQELRKT LKELIFCSWC FAV

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.80
Transmembrane Helix	49	69	0.88
Cytoplasmic	70	77	0.84
Transmembrane Helix	78	102	0.84
Non-Cytoplasmic	103	123	0.89
Transmembrane Helix	124	145	0.90
Cytoplasmic	146	165	0.85
Transmembrane Helix	166	187	0.93
Non-Cytoplasmic	188	193	0.83
Transmembrane Helix	194	218	0.89
Cytoplasmic	219	240	0.88
Transmembrane Helix	241	264	0.89
Non-Cytoplasmic	265	280	0.85
Transmembrane Helix	281	302	0.90
Cytoplasmic	303	323	0.97