YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190339550, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPVIACASF ALFVLRVVDC VWIDKNGAFI KDHRTAFFGA YSSQFYPRYP LYMMQLYRDF  60
   61 SGNKMLTTPA SVDNPALHQS DFVLSLIAQD CHQTEERWTV SFDMSSLSAS DNIQLSELRI 120
  121 RLPAFSASRR VTVDIFHQHK QHCASDSVFC RNKKLFLGSV KSVDVSQSSS SWRVFNITEL 180
  181 LQQWLIQGMD TPDRVTAPDY DQGSGSGSGD DFIESLTSSW PRKIQHPTAE RVMIVVFYKE 240
  241 TVTHSASSLM NTVAQSKYVT LNRPADGTQG RRHKRNRVER MRMTDDRNVT GKPTPSEEQQ 300
  301 ASLCRRVDMW VDFDQIGWDE WIVHPKRYNA YRCEGECPSP LDETYNPTNH AYMQSLLKLY 360
  361 QPERVSCPSC VPLRLSSLSM LYYEGDGVVM RHHEDMIVEE CGCH

Type	Start	End	Confidence
Signal Peptide	1	20	0.98
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	404	0.99