YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|189546383, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCDKAVSYL RIVGTTLFGI SLLVGISTAY IMGYKLVTTP GNYLSFGLYG AILVIHLIIQ  60
   61 SVFALLEHRN MKRSLETPIK LNKSLALCIA AYQEDPNYLR KCLISVKRLT YPGIKVIMVI 120
  121 DGNNDDDCYM MEIFREIMGR DKAATYIWKS NYHHRGPEET EESYATSLQH VSHLVLNNKC 180
  181 VCIMQKWGGK REVMYTAFKA LGRSVDYVQV CDSDTMLDPA SSVEMVKVLE EDPNVGGVGG 240
  241 DVQILNKYES WVSFLSSVRY WMAFNIERAC QSYFGCVQCI SGPLGMYRNS LLHEFLEDWY 300
  301 DQTFMGSHCS FGDDRHLTNR VLSLGYATKY TARSKCLTET PITYLRWLNQ QTRWSKSYFR 360
  361 EWLYNSLWFH KHHLWMTYEA VITGFFPFFL IATAIQLFYQ GRIWNILLFL LIVQVVALIK 420
  421 SSFASCLRGN IVMVFMSFYS VLYMSSLLPA KMFAIATINK SGWGTSGRKT VVVNFIGLIP 480
  481 ISIWFTILFV GIIYTIIQET RKPFPESEKV VLIIGAIVYI SYWVVFLTLY AVLIMKCGKR 540
  541 KKGQQYDMVL DV

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	32	0.89
Non-Cytoplasmic	33	44	0.83
Transmembrane Helix	45	66	0.92
Cytoplasmic	67	373	0.87
Transmembrane Helix	374	397	0.85
Non-Cytoplasmic	398	402	0.46
Transmembrane Helix	403	424	0.82
Cytoplasmic	425	430	0.42
Transmembrane Helix	431	455	0.77
Non-Cytoplasmic	456	470	0.43
Transmembrane Helix	471	497	0.85
Cytoplasmic	498	509	0.44
Transmembrane Helix	510	534	0.88
Non-Cytoplasmic	535	552	0.45