YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24111232, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKASVMLAVL FVLVYSGSYA TTADHLMETS TLKNDESSLQ CSCENTNLCE NNSCWGRICF  60
   61 YTSVHERVVR GCFQTAEQCY VPAIPGVYTK CCYTHHCNAN LTMPEKPVEK PIRVILLVGV 120
  121 PLLVLLVIAM AACGLVLWLR TRRQYCHPVE HDTSMLKVPS GGDPTYGDIF DEFCTSGSGT 180
  181 GLPYLVQRTM ARQISLVECV GKGRYGEVWR GTWMGESVAV KIFSSRDEQS WFRETEIYNT 240
  241 VQLRHENILG FIASDMTSKN SSTQLWLVTH FHELGSLYDF LQYSTLDPEG CLRMCLSIAS 300
  301 GLVHLHTEIL STQGKPAIAH RDLKSRNILV KRNGQCCIAD LGLAVIHSQS TDYLDVGTNP 360
  361 RVGTKRYMAP EVLDETIRVD VFESYKQTDI WALGLVLWEI TRRTIVNGIV EEYRPPFFDM 420
  421 VPSDPSFEEM KKVVCVDQHR PSLHNRLHSH PILSAIAKIM KECWFQSPSA RLTALRVRKS 480
  481 LSKLDQDHDY DIDKLKLDL

Type	Start	End	Confidence
Signal Peptide	1	20	0.98
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	114	0.97
Transmembrane Helix	115	139	0.78
Cytoplasmic	140	499	0.80