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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|27545187, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAERGARLLL SLFCLTITVS HAEKGSAVRN FSPFWFSTEP SDTLAVRGAP VLLNCSVHSE  60
   61 SPAKIEWKKD GSFLSLASDE RRHVLADGSL LISSVVHSKH NKPDEGVYQC VATIDNLGTI 120
  121 ISRTARLNVA GIARFLSQPE MASVRVGDSQ VLSCEVNPDL VSFIRWEQNK EAVELDHRVF 180
  181 SLPSGALVIS NATETDAGLY RCVIDNAGPT KISEEAQLHI LTETGEERTL EFLQEPQHVS 240
  241 KLVGESVLLP CVVTGYPTPE ITWMYKDQLI EDSSGRFEIL GGGSLRIFNL TEEDAGVYNC 300
  301 LAENTNGSIE AQAELTLKDS PQFLKKPVNV FAHEATDVIF ECEVSGSPSP TIKWVKNGDA 360
  361 VIPSDYFKII KEQNLQVLGL VKSDEGFYQC LAENDAGNVQ SSAQLVILDQ GSRGGAGPTP 420
  421 SAPRDVVASL VSTRFLKLTW RLPAEPHGDD VTYSVYYSLE GTNRERIVNT SRPGEMQVTI 480
  481 QNLMPDTKYA FRVVAHNKNG PGESSVPLKV ETQPEVQVPG PAPNLHAVVM SPSTVSLSWD 540
  541 VPLIGNGEIQ NYKIYYMEKG MDSEQDLDVN TLSYTMTGLK KFTEYSFRLV AYNKHGPGVS 600
  601 TEDISVRTYS DVPSSPPQNM TVEVLNSKSL MIRWQPPPAD AQNGEITGYK IRYRKGTRKS 660
  661 EVAEITSGSQ LYQLIDGLQR GTEYMLRVSA MTVNGTGPAT DWTTAETFES DLDESRVPDV 720
  721 PSSLHVRSLV NSIVVSWTPP ENQDIVVRGY SISYGIGSPH AQTIKVDYKQ RYYTIENLNP 780
  781 NSHYVITLKA FNNVGEGIPV YESAITRPQS DPIDPDVDLY ELFHAPYTPV PDPIPMLPPV 840
  841 GVQASVLNQD TIKVTWADNS LPKNQKITDA RYYTVRWKTN IPANTKFKVA NTTTLFHTVT 900
  901 GLKPNTLYEF SVMVTKGRRT STWSMTAHGT TFESIPSSPP KDVTVVSKEG RPKTIIVNWQ 960
  961 PPSEANGKIT GYIIYYSTDV KAEVHDWVIE PVVGNRLTHQ IQELTLDTTY YFKIQARNSK1020
 1021 GMGPMSEAVQ FRTPKAESSD KMANDQAPGI SVKQGRPSAP DNGFGSPGKP DMSGTGDNHI1080
 1081 LVIVIIVSVG AFTIIVVVVG AFLCTRRTTT QQKKKRAACK SANGSHKYKG NSKDLKPPDL1140
 1141 WIHHERLELK PIDKSPEPNP VMTDTPIPRT SQDITPVDGS MDPMLQRRNS YRGHESEDSM1200
 1201 STLAGRRGMR PKMMMPFDAQ PPQPVISAHP IHSLDNHHHH YHLGSLASPT RSYLHHQSST1260
 1261 RSIATPISHL DRAESTESVR NTPNAELLPP SGQPSCTTDL SETDISFHSS AAEEEPAFAT1320
 1321 PTAHVRPTHP LKSFAVPAIP AHAMYDSAAL PSTPLLSQTG PHSVKTASIG TLGRTRTPMP1380
 1381 VIVPNAPDVS EGCRLHEDAG SNYETDELSE EMAHLEGLMK DLNAITTA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle