YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|182891570, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTCHHGDCG SNSDAERRAT DDEANMEDAE LSELGPLLTS PANSEESRGA SASPDENEDE  60
   61 KEEGGLRVVT LPMQAHHAME KMEEFVHKIW EGHWRVIPYH LLPDWLKDND YLLHGHRPPM 120
  121 PSFRACFGSI FRIHTETGNI WTHLLGLILF LCLGTLTMLR PNVSFMAPVQ EKVVFGVFFL 180
  181 GAVLCLCFSW LFHTVYCHSE KVSRTFSKLD YSGIALLIMG SFVPWLYYSF YCSPQPRLIY 240
  241 LSVVCVLGVA AIIVAQWDRF ATPRHRSTRA GVFLGLGLSG LVPTMHFTIA EGFVKATTVG 300
  301 QMGWFYLMGA MYISGAALYA ARIPERYFPG RCDIWFQSHQ IFHVLVVGAA FVHFYGISNL 360
  361 QEFRYGLEGG CTDDTLL

Type	Start	End	Confidence
Cytoplasmic	1	139	0.99
Transmembrane Helix	140	159	0.96
Non-Cytoplasmic	160	173	0.88
Transmembrane Helix	174	196	0.90
Cytoplasmic	197	208	0.90
Transmembrane Helix	209	228	0.93
Non-Cytoplasmic	229	237	0.78
Transmembrane Helix	238	257	0.96
Cytoplasmic	258	269	0.83
Transmembrane Helix	270	290	0.93
Non-Cytoplasmic	291	301	0.87
Transmembrane Helix	302	321	0.94
Cytoplasmic	322	338	0.83
Transmembrane Helix	339	357	0.92
Non-Cytoplasmic	358	377	0.94