YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28422291, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWQKSVLDK LAQTFQIRNK LLRQGLAECL GTLILVMFGC GSLAQLKLSE GSHGLFLTAN  60
   61 LAFGFGATLG ILVCGQVSGG HLNPAVTFAL CLLGREKWRK FPVYFLFQTL GSFLGAAIIF 120
  121 AEYHDAIYDY AGESNELLVL GEKETAGIFA TYPSKYLTPL NGFFDQVIGT ASLIVCILAI 180
  181 VDPYNNPIPQ GLEAFTVGFS VLIIGLSMGF NSGYAVNPAR DFGPRLFTAM AGWGSEVFTA 240
  241 RDYWFLVPIF APFIGAVIGV IVYQLMVGWH VEGEARDKKA KAREEVMNLN DVASKE

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	46	0.83
Non-Cytoplasmic	47	60	0.76
Transmembrane Helix	61	80	0.88
Cytoplasmic	81	100	0.80
Transmembrane Helix	101	121	0.93
Non-Cytoplasmic	122	161	0.95
Transmembrane Helix	162	184	0.82
Cytoplasmic	185	193	0.77
Transmembrane Helix	194	215	0.90
Non-Cytoplasmic	216	243	0.90
Transmembrane Helix	244	267	0.86
Cytoplasmic	268	296	0.91