YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47085793, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.57
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.56
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	395	0.95
Transmembrane Helix	396	420	0.88
Cytoplasmic	421	438	0.94
Transmembrane Helix	439	458	0.95
Non-Cytoplasmic	459	534	0.89
Transmembrane Helix	535	556	0.92
Cytoplasmic	557	563	0.73
Transmembrane Helix	564	588	0.86
Non-Cytoplasmic	589	632	0.82
Transmembrane Helix	633	651	0.92
Cytoplasmic	652	724	0.91
Transmembrane Helix	725	746	0.49
Non-Cytoplasmic	747	756	0.58
Transmembrane Helix	757	783	0.82
Cytoplasmic	784	822	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLFRSEEV CLIQLFLQSG SAYNCVSELG ELGIVEFRDL NPNVNAFQRK FVNEVRRCEE  60
   61 LEKTFAFLEQ EINRSLSQKL QPPIPMPPAP QPRELLTIEE ESERLARELR EVSRNRDSLR 120
  121 SQYTQLCQYR GVLKQTHSLT ASQAPLVSFE PMGLAENRQD VRLSFVAGVV HPWKVPAFER 180
  181 LLWRACRGYI IVDFHEMEEK LEHPHTDEQL QWTVFLISFW GDQIGQKVKK ICDCFHTQTF 240
  241 PYPENQAERE ETLNGLRGRI EDIKSVMGET EQYMQQLLVR ALARLPEWVV QVQKCKAVQT 300
  301 VLNLCSPSVT DKCLIAEAWC PVSQLPALQS ALREGGRKSG SNVDSFYNRL PATTSPPTLF 360
  361 PTNSFTAGFQ SIVDAYGVAS YREVNPAVYT IITFPFLFAV MFGDVGHGLL MTLAALWMIL 420
  421 EENDPKLRKN TNEIWRMMFG GRYLILLMGL FSIYTGAIYN ECFSKGLSTF SSGWHVRPNA 480
  481 EFYNWTEETF KKNMYLSLDP NVTGVFTGPY PFGIDPIWGL ANNHLTFLNS YKMKMSVIIG 540
  541 VIHMTFGVCL SFFNYIHFRE VSSVFLVLIP ELCFMLCLFG YLIFMVIYKW LVYGPVNSDS 600
  601 APSILIHFID MFLFTENKDN KPLYTGQMTV QKVLVIVAVL SVPVLLLGKP IQEYLSHKRK 660
  661 RRNPTGDRRP LLAENGSINS QQGDVDARGG GGGEEEEFDT ANVFMHQAIH TIEYCLGCIS 720
  721 NTASYLRLWA LSLAHAQLSE VLWTMVMRQS FGQLSYVGSV MAALVFVGFA VLTVSILLVM 780
  781 EGLSAFLHAL RLHWVEFQNK FYSGTGYKLT PFDFSFGAFS TK