YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42542915, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATALSGGFS KNALFILSAA LMLQAVLGDG KTLVLLDNPN IRDTHSIFFR SLADRGFDLT  60
   61 FKTADDPGLS LLKYGQFLYD HLILFSPSVE DFGGNINVET ITAFIDGGGN VLVAASSDIG 120
  121 DPLRELGSEC GIEFDEEKTA VIDHHNYDIS DPGEHTLIVA DPENLLKAPT IVGKPTDKPV 180
  181 LFKGVGMVAD PDNPLVLDIL TGSSTSYSYF PDRPITQYPH AVGKNTLLIA GLQARNNARV 240
  241 VFSGSLHFFS DAFFNSAVQK AATGSKRYEQ TGNQDLAEAL SRWVFKEAGV LRVGDVTHHP 300
  301 VGESTPPAAY TVTDLVEYGI VIEMLSGGKW VPFDGDDIQL EFVRIDPFVR TYLKKNGGKY 360
  361 SVQFKLPDVY GVFQFKVDYN RLGYTHLYSS TQVSVRPLQH TQYERFIPSA FPYYASAFSM 420
  421 MAGLFVFSVV FLHMREKEKS D

Type	Start	End	Confidence
Signal Peptide	1	28	0.99
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	409	0.99
Transmembrane Helix	410	432	0.92
Cytoplasmic	433	441	0.90