YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125838506, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGALEIVG MCVTIIGLIG VSASTGMPMW RVTAFIGENI IVMETRYEGL WMNCYRQANI  60
   61 RMQCKVYDSL LALTPDLQAA RGLMCTSVAL TGVGLLIAIV GMKCTACIQD NDRAKRMVLI 120
  121 ISGCMILAGC FCCLIPVSWT GNAIIRDFYN PLLIDAQRRE LGEALYIGWV SSAFLFAGGC 180
  181 IFICCSGSLD KGPDPKYMYS RNAPAPYVAY QPQPVAYHPQ PRSVYSPSGP PSFIEQSYQP 240
  241 SRQQSFIQPS RQQSFIQPSR HPSARSAVAY L

Type	Start	End	Confidence
Cytoplasmic	1	7	0.92
Transmembrane Helix	8	30	0.88
Non-Cytoplasmic	31	78	0.97
Transmembrane Helix	79	102	0.86
Cytoplasmic	103	117	0.86
Transmembrane Helix	118	140	0.94
Non-Cytoplasmic	141	164	0.94
Transmembrane Helix	165	189	0.85
Cytoplasmic	190	271	0.98